diff --git a/spring-boot/src/main/java/org/springframework/boot/web/servlet/ServletContextInitializerBeans.java b/spring-boot/src/main/java/org/springframework/boot/web/servlet/ServletContextInitializerBeans.java
index ffafe68630..9fa88ff166 100644
--- a/spring-boot/src/main/java/org/springframework/boot/web/servlet/ServletContextInitializerBeans.java
+++ b/spring-boot/src/main/java/org/springframework/boot/web/servlet/ServletContextInitializerBeans.java
@@ -36,6 +36,7 @@ import javax.servlet.Servlet;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 
+import org.springframework.aop.scope.ScopedProxyUtils;
 import org.springframework.beans.factory.ListableBeanFactory;
 import org.springframework.beans.factory.support.BeanDefinitionRegistry;
 import org.springframework.core.annotation.AnnotationAwareOrderComparator;
@@ -229,7 +230,7 @@ public class ServletContextInitializerBeans
 		String[] names = beanFactory.getBeanNamesForType(type, true, false);
 		Map<String, T> map = new LinkedHashMap<String, T>();
 		for (String name : names) {
-			if (!excludes.contains(name)) {
+			if (!excludes.contains(name) && !ScopedProxyUtils.isScopedTarget(name)) {
 				T bean = beanFactory.getBean(name, type);
 				if (!excludes.contains(bean)) {
 					map.put(name, bean);
diff --git a/spring-boot/src/test/java/org/springframework/boot/web/servlet/FilterRegistrationIntegrationTests.java b/spring-boot/src/test/java/org/springframework/boot/web/servlet/FilterRegistrationIntegrationTests.java
new file mode 100644
index 0000000000..6241afc0a1
--- /dev/null
+++ b/spring-boot/src/test/java/org/springframework/boot/web/servlet/FilterRegistrationIntegrationTests.java
@@ -0,0 +1,95 @@
+/*
+ * Copyright 2012-2016 the original author or authors.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.springframework.boot.web.servlet;
+
+import javax.servlet.Filter;
+
+import org.junit.After;
+import org.junit.Test;
+
+import org.springframework.boot.context.embedded.AnnotationConfigEmbeddedWebApplicationContext;
+import org.springframework.boot.context.embedded.tomcat.TomcatEmbeddedServletContainerFactory;
+import org.springframework.boot.testutil.MockFilter;
+import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+
+import static org.assertj.core.api.Assertions.assertThat;
+
+/**
+ * Integration tests for {@link Filter} registration.
+ *
+ * @author Andy Wilkinson
+ */
+public class FilterRegistrationIntegrationTests {
+
+	private AnnotationConfigEmbeddedWebApplicationContext context;
+
+	@After
+	public void cleanUp() {
+		if (this.context != null) {
+			this.context.close();
+		}
+	}
+
+	@Test
+	public void normalFiltersAreRegistered() {
+		load(FilterConfiguration.class);
+		assertThat(this.context.getServletContext().getFilterRegistrations()).hasSize(1);
+	}
+
+	@Test
+	public void scopedTargetFiltersAreNotRegistered() {
+		load(ScopedTargetFilterConfiguration.class);
+		assertThat(this.context.getServletContext().getFilterRegistrations()).isEmpty();
+	}
+
+	private void load(Class<?> configuration) {
+		this.context = new AnnotationConfigEmbeddedWebApplicationContext(
+				ContainerConfiguration.class, configuration);
+	}
+
+	@Configuration
+	static class ContainerConfiguration {
+
+		@Bean
+		public TomcatEmbeddedServletContainerFactory servletContainerFactory() {
+			return new TomcatEmbeddedServletContainerFactory(0);
+		}
+
+	}
+
+	@Configuration
+	static class ScopedTargetFilterConfiguration {
+
+		@Bean(name = "scopedTarget.myFilter")
+		public Filter myFilter() {
+			return new MockFilter();
+		}
+
+	}
+
+	@Configuration
+	static class FilterConfiguration {
+
+		@Bean
+		public Filter myFilter() {
+			return new MockFilter();
+		}
+
+	}
+
+}